LSAT_5X26940 protein (Lactuca sativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LSAT_5X26940

Uncharacterized protein; Belongs to the cyclin family. (390 aa)

Predicted Functional Partners:

LSAT_8X67801

0.901

LSAT_1X108420

0.875

LSAT_1X108541

0.875

LSAT_4X128021

0.855

LSAT_8X42460

0.855

LSAT_9X6940

0.855

LSAT_6X13361

0.851

LSAT_7X49601

0.846

LSAT_7X49581

0.846

LSAT_3X69700

0.842

Your Current Organism:

Lactuca sativa

NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSAT_1X108420	LSAT_1X108541	A0A2J6M3T0	A0A2J6M452	Spt4 domain-containing protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.540
LSAT_1X108420	LSAT_4X128021	A0A2J6M3T0	A0A2J6K8L4	Spt4 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.778
LSAT_1X108420	LSAT_5X26940	A0A2J6M3T0	A0A2J6KVR6	Spt4 domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.875
LSAT_1X108420	LSAT_6X13361	A0A2J6M3T0	A0A2J6LRX8	Spt4 domain-containing protein.	Uncharacterized protein.	0.992
LSAT_1X108420	LSAT_7X49581	A0A2J6M3T0	A0A2J6LEN5	Spt4 domain-containing protein.	PPR_long domain-containing protein.	0.674
LSAT_1X108420	LSAT_7X49601	A0A2J6M3T0	A0A2J6LEN0	Spt4 domain-containing protein.	MAT1 domain-containing protein.	0.674
LSAT_1X108420	LSAT_8X42460	A0A2J6M3T0	A0A2J6LG31	Spt4 domain-containing protein.	Protein kinase domain-containing protein.	0.778
LSAT_1X108420	LSAT_8X67801	A0A2J6M3T0	A0A2J6LJK4	Spt4 domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.783
LSAT_1X108420	LSAT_9X6940	A0A2J6M3T0	A0A2J6LLC2	Spt4 domain-containing protein.	Protein kinase domain-containing protein.	0.778
LSAT_1X108541	LSAT_1X108420	A0A2J6M452	A0A2J6M3T0	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Spt4 domain-containing protein.	0.540
LSAT_1X108541	LSAT_4X128021	A0A2J6M452	A0A2J6K8L4	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.778
LSAT_1X108541	LSAT_5X26940	A0A2J6M452	A0A2J6KVR6	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Uncharacterized protein; Belongs to the cyclin family.	0.875
LSAT_1X108541	LSAT_6X13361	A0A2J6M452	A0A2J6LRX8	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Uncharacterized protein.	0.992
LSAT_1X108541	LSAT_7X49581	A0A2J6M452	A0A2J6LEN5	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	PPR_long domain-containing protein.	0.674
LSAT_1X108541	LSAT_7X49601	A0A2J6M452	A0A2J6LEN0	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	MAT1 domain-containing protein.	0.674
LSAT_1X108541	LSAT_8X42460	A0A2J6M452	A0A2J6LG31	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Protein kinase domain-containing protein.	0.778
LSAT_1X108541	LSAT_8X67801	A0A2J6M452	A0A2J6LJK4	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.783
LSAT_1X108541	LSAT_9X6940	A0A2J6M452	A0A2J6LLC2	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Protein kinase domain-containing protein.	0.778
LSAT_3X69700	LSAT_4X128021	A0A2J6JKF0	A0A2J6K8L4	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.989
LSAT_3X69700	LSAT_5X26940	A0A2J6JKF0	A0A2J6KVR6	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.842