STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_9X43161Uncharacterized protein. (335 aa)    
Predicted Functional Partners:
LSAT_8X109400
Uncharacterized protein.
    
   0.521
LSAT_8X123401
NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.
  
     0.465
LSAT_8X131800
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
  
  
  0.460
LSAT_2X69381
GTD-binding domain-containing protein.
  
     0.450
LSAT_7X12481
F-box domain-containing protein.
  
     0.450
LSAT_7X87081
TF-B3 domain-containing protein.
  
     0.445
LSAT_8X146520
Uncharacterized protein.
  
     0.438
LSAT_8X102561
Jacalin-type lectin domain-containing protein.
  
     0.437
LSAT_8X15361
XH domain-containing protein.
  
     0.431
LSAT_0X13420
Uncharacterized protein.
  
     0.430
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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