STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_8X83800Uncharacterized protein; Belongs to the calmodulin family. (408 aa)    
Predicted Functional Partners:
LSAT_2X72800
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.693
LSAT_6X29041
Uncharacterized protein.
   
 0.679
LSAT_2X69340
Uncharacterized protein.
    
 0.600
LSAT_9X41400
Peptidylprolyl isomerase.
   
 0.599
LSAT_3X45101
Uncharacterized protein.
   
 0.507
LSAT_6X96361
Dynein light chain.
   
 0.494
LSAT_2X64421
Uncharacterized protein.
    
 0.460
LSAT_8X109341
Homeobox domain-containing protein.
   
   0.417
LSAT_4X64281
Ion_trans domain-containing protein.
    
 
 0.416
LSAT_4X66721
Uncharacterized protein.
    
 
 0.416
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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