STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_5X51421Endo/exonuclease/phosphatase domain-containing protein. (344 aa)    
Predicted Functional Partners:
LSAT_5X157280
Uncharacterized protein.
    
 0.770
LSAT_3X110020
Amidohydro-rel domain-containing protein.
     
 0.714
LSAT_7X18941
Amidohydro-rel domain-containing protein.
     
 0.714
LSAT_5X152981
PA domain-containing protein.
    
 0.568
LSAT_5X151981
PA domain-containing protein.
    
 0.568
LSAT_8X110480
EGF_CA domain-containing protein.
    
 0.568
LSAT_9X111780
EGF_CA domain-containing protein.
    
 0.568
LSAT_2X59580
EGF_CA domain-containing protein.
    
 0.568
LSAT_7X85200
EGF_CA domain-containing protein.
    
 0.568
LSAT_9X38760
EGF_CA domain-containing protein.
    
 0.568
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.