STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_4X146641RanBP2-type domain-containing protein. (331 aa)    
Predicted Functional Partners:
LSAT_4X184520
VWFA domain-containing protein.
      
 0.563
LSAT_5X82521
CN hydrolase domain-containing protein.
      
 0.489
LSAT_6X49801
Uncharacterized protein.
      
 0.483
LSAT_4X11801
Uncharacterized protein.
      
 0.483
LSAT_9X16300
Uncharacterized protein.
      
 0.483
LSAT_7X54620
Uncharacterized protein.
      
 0.482
LSAT_3X77541
Uncharacterized protein.
  
    0.473
LSAT_5X47620
F-box domain-containing protein.
  
     0.468
LSAT_1X68000
Uncharacterized protein.
      
 0.443
LSAT_7X93260
Uncharacterized protein.
  
  
 0.442
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.