STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_1X55000TPR_REGION domain-containing protein. (344 aa)    
Predicted Functional Partners:
LSAT_3X28360
Uncharacterized protein.
  
 0.991
LSAT_5X4380
Ribosomal_L2_C domain-containing protein.
  
 0.986
LSAT_3X22520
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.985
LSAT_3X125540
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.980
LSAT_5X31321
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.980
LSAT_5X90640
Uncharacterized protein.
   
 
 0.978
LSAT_7X91160
Uncharacterized protein.
  
 
 0.976
LSAT_5X142921
Uncharacterized protein.
   
 
 0.976
LSAT_1X53901
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.974
LSAT_2X102901
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
  
 0.973
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.