STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_8X28160Uncharacterized protein. (730 aa)    
Predicted Functional Partners:
LSAT_6X49841
Uncharacterized protein.
      
 0.533
LSAT_8X83641
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
      
 0.505
LSAT_4X77381
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.490
LSAT_5X176421
Protein kinase domain-containing protein.
      
 0.482
LSAT_5X48440
Uncharacterized protein.
      
 0.482
LSAT_1X8801
VQ domain-containing protein.
      
 0.482
LSAT_2X47601
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
      
 0.481
LSAT_8X117641
Uncharacterized protein.
      
 0.431
LSAT_5X145881
AMP_N domain-containing protein.
   
 
 0.426
LSAT_4X60101
A_deaminase domain-containing protein.
      
 0.426
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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