STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_4X181201Uncharacterized protein. (140 aa)    
Predicted Functional Partners:
LSAT_1X125520
Uncharacterized protein.
  
     0.525
LSAT_6X104720
VHS domain-containing protein.
  
   
 0.512
LSAT_5X54040
BTB domain-containing protein.
  
 
   0.497
LSAT_7X116441
Uncharacterized protein.
  
     0.484
LSAT_2X37640
Uncharacterized protein.
  
     0.484
LSAT_5X72540
Uncharacterized protein.
  
     0.480
LSAT_9X24361
COPIIcoated_ERV domain-containing protein.
  
  
  0.476
LSAT_2X1961
Uncharacterized protein.
  
 
   0.476
LSAT_9X89380
Uncharacterized protein.
  
     0.473
LSAT_8X61861
Uncharacterized protein.
  
  
  0.469
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.