STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_7X5841Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (238 aa)    
Predicted Functional Partners:
LSAT_7X9600
TRANSKETOLASE_1 domain-containing protein.
  
 0.981
LSAT_3X132321
TRANSKETOLASE_1 domain-containing protein.
  
 0.981
LSAT_6X11721
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.977
LSAT_2X86060
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.976
LSAT_8X34821
Uncharacterized protein.
  
 0.975
LSAT_1X130040
Uncharacterized protein.
  
 0.972
LSAT_3X54301
Uncharacterized protein.
  
 0.970
LSAT_6X73360
Phosphoribulokinase.
  
 
 0.967
LSAT_6X17740
Phosphoribulokinase.
  
 
 0.967
LSAT_8X43001
Uncharacterized protein.
  
 0.958
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.