STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_7X49601MAT1 domain-containing protein. (189 aa)    
Predicted Functional Partners:
LSAT_8X67801
CYCLIN domain-containing protein; Belongs to the cyclin family.
   
 0.995
LSAT_3X69700
Uncharacterized protein.
    
 0.993
LSAT_6X46340
General transcription factor IIH subunit.
   
 0.993
LSAT_4X52761
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.993
LSAT_9X33460
Uncharacterized protein.
    
 0.986
LSAT_1X66020
Uncharacterized protein.
    
 0.986
LSAT_4X128021
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.981
LSAT_8X42460
Protein kinase domain-containing protein.
   
 0.981
LSAT_9X6940
Protein kinase domain-containing protein.
   
 0.981
LSAT_2X67161
RPOL4c domain-containing protein.
    
 0.980
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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