STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_1X13501Uncharacterized protein. (529 aa)    
Predicted Functional Partners:
LSAT_9X26661
AAI domain-containing protein.
  
 
  0.560
LSAT_0X45120
Uncharacterized protein.
  
 
  0.559
LSAT_4X180041
DUF569 domain-containing protein.
  
 
  0.544
LSAT_2X69381
GTD-binding domain-containing protein.
  
 
  0.532
LSAT_2X90461
DUF569 domain-containing protein.
  
 
  0.528
LSAT_2X127560
RING-type domain-containing protein.
  
     0.524
LSAT_5X29420
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
 
  0.523
LSAT_6X10560
Uncharacterized protein.
  
 
  0.520
LSAT_5X31100
Uncharacterized protein.
  
 
   0.519
LSAT_5X75081
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
  
 
   0.517
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
Server load: low (28%) [HD]