STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_8X68061PAS domain-containing protein. (606 aa)    
Predicted Functional Partners:
LSAT_9X42181
Uncharacterized protein.
  
 
 0.987
LSAT_1X14320
Uncharacterized protein.
    
 0.962
LSAT_5X21481
Uncharacterized protein.
    
 0.962
LSAT_7X54981
Uncharacterized protein.
  
0.921
LSAT_6X101520
Uncharacterized protein.
  
 
 
 0.883
LSAT_3X78320
Uncharacterized protein.
  
 
 
 0.876
LSAT_5X129380
Uncharacterized protein.
  
 
 
 0.873
LSAT_2X63220
WD_REPEATS_REGION domain-containing protein.
    
 
 0.847
LSAT_9X83701
Uncharacterized protein.
    
 0.578
LSAT_3X120400
Photolyase/cryptochrome alpha/beta domain-containing protein.
      
 0.567
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.