LSAT_0X30781 protein (Lactuca sativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LSAT_0X30781

Uncharacterized protein. (335 aa)

Predicted Functional Partners:

LSAT_7X23761

0.776

LSAT_9X67140

0.612

LSAT_3X121341

0.591

LSAT_9X113901

0.581

LSAT_7X2701

0.560

LSAT_9X25241

0.551

LSAT_3X67061

0.541

LSAT_8X45601

0.536

LSAT_4X92920

0.532

LSAT_6X44101

0.529

Your Current Organism:

Lactuca sativa

NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSAT_0X30781	LSAT_3X121341	A0A2J6LL20	A0A2J6K1X8	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.591
LSAT_0X30781	LSAT_3X67061	A0A2J6LL20	A0A2J6KT55	Uncharacterized protein.	Autophagy protein 5; Required for autophagy.	0.541
LSAT_0X30781	LSAT_4X92920	A0A2J6LL20	A0A2J6KU61	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.	0.532
LSAT_0X30781	LSAT_6X44101	A0A2J6LL20	A0A2J6JG88	Uncharacterized protein.	Uncharacterized protein.	0.529
LSAT_0X30781	LSAT_7X23761	A0A2J6LL20	A0A2J6JTJ5	Uncharacterized protein.	Uncharacterized protein.	0.776
LSAT_0X30781	LSAT_7X2701	A0A2J6LL20	A0A2J6JN38	Uncharacterized protein.	Uncharacterized protein.	0.560
LSAT_0X30781	LSAT_8X45601	A0A2J6LL20	A0A2J6K4J8	Uncharacterized protein.	Cysteine protease.	0.536
LSAT_0X30781	LSAT_9X113901	A0A2J6LL20	A0A2J6JRI9	Uncharacterized protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.581
LSAT_0X30781	LSAT_9X25241	A0A2J6LL20	A0A2J6LP12	Uncharacterized protein.	zf-Tim10_DDP domain-containing protein.	0.551
LSAT_0X30781	LSAT_9X67140	A0A2J6LL20	A0A2J6JLL0	Uncharacterized protein.	Uncharacterized protein.	0.612
LSAT_3X121341	LSAT_0X30781	A0A2J6K1X8	A0A2J6LL20	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.591
LSAT_3X67061	LSAT_0X30781	A0A2J6KT55	A0A2J6LL20	Autophagy protein 5; Required for autophagy.	Uncharacterized protein.	0.541
LSAT_3X67061	LSAT_4X92920	A0A2J6KT55	A0A2J6KU61	Autophagy protein 5; Required for autophagy.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.	0.999
LSAT_3X67061	LSAT_8X45601	A0A2J6KT55	A0A2J6K4J8	Autophagy protein 5; Required for autophagy.	Cysteine protease.	0.678
LSAT_4X92920	LSAT_0X30781	A0A2J6KU61	A0A2J6LL20	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.	Uncharacterized protein.	0.532
LSAT_4X92920	LSAT_3X67061	A0A2J6KU61	A0A2J6KT55	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.	Autophagy protein 5; Required for autophagy.	0.999
LSAT_4X92920	LSAT_8X45601	A0A2J6KU61	A0A2J6K4J8	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.	Cysteine protease.	0.696
LSAT_6X44101	LSAT_0X30781	A0A2J6JG88	A0A2J6LL20	Uncharacterized protein.	Uncharacterized protein.	0.529
LSAT_6X44101	LSAT_7X23761	A0A2J6JG88	A0A2J6JTJ5	Uncharacterized protein.	Uncharacterized protein.	0.462
LSAT_7X23761	LSAT_0X30781	A0A2J6JTJ5	A0A2J6LL20	Uncharacterized protein.	Uncharacterized protein.	0.776