LSAT_5X103060 protein (Lactuca sativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LSAT_5X103060

Uncharacterized protein. (715 aa)

Predicted Functional Partners:

LSAT_1X61501

0.934

LSAT_5X167021

0.933

LSAT_3X120281

0.904

LSAT_6X40960

0.904

LSAT_7X80520

0.903

LSAT_1X26901

0.900

LSAT_4X63901

0.453

LSAT_4X59081

0.414

Your Current Organism:

Lactuca sativa

NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSAT_1X26901	LSAT_1X61501	A0A2J6LB92	A0A2J6K5Z2	Uncharacterized protein.	Uncharacterized protein.	0.947
LSAT_1X26901	LSAT_3X120281	A0A2J6LB92	A0A2J6LFP0	Uncharacterized protein.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.955
LSAT_1X26901	LSAT_5X103060	A0A2J6LB92	A0A2J6LLF8	Uncharacterized protein.	Uncharacterized protein.	0.900
LSAT_1X26901	LSAT_5X167021	A0A2J6LB92	A0A2J6KV29	Uncharacterized protein.	Uncharacterized protein.	0.956
LSAT_1X26901	LSAT_6X40960	A0A2J6LB92	A0A2J6LTC1	Uncharacterized protein.	Uncharacterized protein.	0.900
LSAT_1X26901	LSAT_7X80520	A0A2J6LB92	A0A2J6LW31	Uncharacterized protein.	Uncharacterized protein.	0.900
LSAT_1X61501	LSAT_1X26901	A0A2J6K5Z2	A0A2J6LB92	Uncharacterized protein.	Uncharacterized protein.	0.947
LSAT_1X61501	LSAT_3X120281	A0A2J6K5Z2	A0A2J6LFP0	Uncharacterized protein.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.997
LSAT_1X61501	LSAT_5X103060	A0A2J6K5Z2	A0A2J6LLF8	Uncharacterized protein.	Uncharacterized protein.	0.934
LSAT_1X61501	LSAT_5X167021	A0A2J6K5Z2	A0A2J6KV29	Uncharacterized protein.	Uncharacterized protein.	0.997
LSAT_1X61501	LSAT_6X40960	A0A2J6K5Z2	A0A2J6LTC1	Uncharacterized protein.	Uncharacterized protein.	0.934
LSAT_1X61501	LSAT_7X80520	A0A2J6K5Z2	A0A2J6LW31	Uncharacterized protein.	Uncharacterized protein.	0.934
LSAT_3X120281	LSAT_1X26901	A0A2J6LFP0	A0A2J6LB92	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Uncharacterized protein.	0.955
LSAT_3X120281	LSAT_1X61501	A0A2J6LFP0	A0A2J6K5Z2	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Uncharacterized protein.	0.997
LSAT_3X120281	LSAT_5X103060	A0A2J6LFP0	A0A2J6LLF8	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Uncharacterized protein.	0.904
LSAT_3X120281	LSAT_5X167021	A0A2J6LFP0	A0A2J6KV29	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Uncharacterized protein.	0.999
LSAT_3X120281	LSAT_6X40960	A0A2J6LFP0	A0A2J6LTC1	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Uncharacterized protein.	0.917
LSAT_3X120281	LSAT_7X80520	A0A2J6LFP0	A0A2J6LW31	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Uncharacterized protein.	0.904
LSAT_4X59081	LSAT_5X103060	A0A2J6MEK4	A0A2J6LLF8	Uncharacterized protein.	Uncharacterized protein.	0.414
LSAT_4X59081	LSAT_7X80520	A0A2J6MEK4	A0A2J6LW31	Uncharacterized protein.	Uncharacterized protein.	0.414