LSAT_2X79501 protein (Lactuca sativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LSAT_2X79501

Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. (181 aa)

Predicted Functional Partners:

LSAT_6X73360

0.921

LSAT_6X17740

0.921

RbcL

0.916

LSAT_1X34140

0.900

LSAT_2X70541

0.799

LSAT_3X85740

0.799

LSAT_9X11781

0.798

LSAT_3X109140

0.797

LSAT_7X98341

0.797

LSAT_3X130301

0.797

Your Current Organism:

Lactuca sativa

NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSAT_1X34140	LSAT_2X79501	A0A2J6MGP2	A0A2J6LMG4	Uncharacterized protein.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.900
LSAT_1X34140	LSAT_6X17740	A0A2J6MGP2	A0A2J6KCP6	Uncharacterized protein.	Phosphoribulokinase.	0.819
LSAT_1X34140	LSAT_6X73360	A0A2J6MGP2	A0A2J6K318	Uncharacterized protein.	Phosphoribulokinase.	0.819
LSAT_1X34140	RbcL	A0A2J6MGP2	A0A2J6KR38	Uncharacterized protein.	Uncharacterized protein.	0.900
LSAT_2X70541	LSAT_2X79501	A0A2J6KBR1	A0A2J6LMG4	Uncharacterized protein.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.799
LSAT_2X79501	LSAT_1X34140	A0A2J6LMG4	A0A2J6MGP2	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Uncharacterized protein.	0.900
LSAT_2X79501	LSAT_2X70541	A0A2J6LMG4	A0A2J6KBR1	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Uncharacterized protein.	0.799
LSAT_2X79501	LSAT_3X109140	A0A2J6LMG4	A0A2J6K5P3	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	RuBisCO_large domain-containing protein.	0.797
LSAT_2X79501	LSAT_3X130301	A0A2J6LMG4	A0A2J6MFR3	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	RuBisCO_large domain-containing protein.	0.797
LSAT_2X79501	LSAT_3X85740	A0A2J6LMG4	A0A2J6LYN2	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Uncharacterized protein.	0.799
LSAT_2X79501	LSAT_6X17740	A0A2J6LMG4	A0A2J6KCP6	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Phosphoribulokinase.	0.921
LSAT_2X79501	LSAT_6X73360	A0A2J6LMG4	A0A2J6K318	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Phosphoribulokinase.	0.921
LSAT_2X79501	LSAT_7X98341	A0A2J6LMG4	A0A2J6M401	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	RuBisCO_large domain-containing protein.	0.797
LSAT_2X79501	LSAT_9X11781	A0A2J6LMG4	A0A2J6KG85	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	RuBisCO_large domain-containing protein.	0.798
LSAT_2X79501	RbcL	A0A2J6LMG4	A0A2J6KR38	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Uncharacterized protein.	0.916
LSAT_3X109140	LSAT_2X79501	A0A2J6K5P3	A0A2J6LMG4	RuBisCO_large domain-containing protein.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.797
LSAT_3X130301	LSAT_2X79501	A0A2J6MFR3	A0A2J6LMG4	RuBisCO_large domain-containing protein.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.797
LSAT_3X130301	LSAT_3X85740	A0A2J6MFR3	A0A2J6LYN2	RuBisCO_large domain-containing protein.	Uncharacterized protein.	0.561
LSAT_3X130301	LSAT_9X11781	A0A2J6MFR3	A0A2J6KG85	RuBisCO_large domain-containing protein.	RuBisCO_large domain-containing protein.	0.544
LSAT_3X85740	LSAT_2X79501	A0A2J6LYN2	A0A2J6LMG4	Uncharacterized protein.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.799

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2023

Credits

Access

Info

About