LSAT_8X90261 protein (Lactuca sativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LSAT_8X90261

Uncharacterized protein. (1400 aa)

Predicted Functional Partners:

LSAT_9X56360

0.755

LSAT_2X122940

0.755

LSAT_2X3201

0.654

LSAT_2X124280

0.654

LSAT_4X66841

0.654

LSAT_8X82561

0.599

LSAT_5X109460

0.594

LSAT_4X7760

0.594

LSAT_1X119700

0.594

LSAT_5X19360

0.587

Your Current Organism:

Lactuca sativa

NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSAT_1X119700	LSAT_2X122940	A0A2J6LDB3	A0A2J6M261	Uncharacterized protein.	CS domain-containing protein.	0.590
LSAT_1X119700	LSAT_2X124280	A0A2J6LDB3	A0A2J6KJF2	Uncharacterized protein.	BUB1 N-terminal domain-containing protein.	0.831
LSAT_1X119700	LSAT_2X3201	A0A2J6LDB3	A0A2J6JTL9	Uncharacterized protein.	BUB1 N-terminal domain-containing protein.	0.831
LSAT_1X119700	LSAT_4X66841	A0A2J6LDB3	A0A2J6MIH1	Uncharacterized protein.	Uncharacterized protein.	0.831
LSAT_1X119700	LSAT_5X19360	A0A2J6LDB3	A0A2J6LFJ9	Uncharacterized protein.	Uncharacterized protein.	0.458
LSAT_1X119700	LSAT_8X90261	A0A2J6LDB3	A0A2J6LNR8	Uncharacterized protein.	Uncharacterized protein.	0.594
LSAT_1X119700	LSAT_9X56360	A0A2J6LDB3	A0A2J6KDI6	Uncharacterized protein.	CS domain-containing protein.	0.590
LSAT_2X122940	LSAT_1X119700	A0A2J6M261	A0A2J6LDB3	CS domain-containing protein.	Uncharacterized protein.	0.590
LSAT_2X122940	LSAT_2X124280	A0A2J6M261	A0A2J6KJF2	CS domain-containing protein.	BUB1 N-terminal domain-containing protein.	0.721
LSAT_2X122940	LSAT_2X3201	A0A2J6M261	A0A2J6JTL9	CS domain-containing protein.	BUB1 N-terminal domain-containing protein.	0.721
LSAT_2X122940	LSAT_4X66841	A0A2J6M261	A0A2J6MIH1	CS domain-containing protein.	Uncharacterized protein.	0.721
LSAT_2X122940	LSAT_4X7760	A0A2J6M261	A0A2J6KVM5	CS domain-containing protein.	Uncharacterized protein.	0.590
LSAT_2X122940	LSAT_5X109460	A0A2J6M261	A0A2J6KMN3	CS domain-containing protein.	Peptidase C50 domain-containing protein.	0.590
LSAT_2X122940	LSAT_8X90261	A0A2J6M261	A0A2J6LNR8	CS domain-containing protein.	Uncharacterized protein.	0.755
LSAT_2X124280	LSAT_1X119700	A0A2J6KJF2	A0A2J6LDB3	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.831
LSAT_2X124280	LSAT_2X122940	A0A2J6KJF2	A0A2J6M261	BUB1 N-terminal domain-containing protein.	CS domain-containing protein.	0.721
LSAT_2X124280	LSAT_4X7760	A0A2J6KJF2	A0A2J6KVM5	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.831
LSAT_2X124280	LSAT_5X109460	A0A2J6KJF2	A0A2J6KMN3	BUB1 N-terminal domain-containing protein.	Peptidase C50 domain-containing protein.	0.831
LSAT_2X124280	LSAT_5X19360	A0A2J6KJF2	A0A2J6LFJ9	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.709
LSAT_2X124280	LSAT_8X90261	A0A2J6KJF2	A0A2J6LNR8	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.654