STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_3X15561RRM domain-containing protein. (144 aa)    
Predicted Functional Partners:
LSAT_9X3120
SnAC domain-containing protein.
    
 0.550
LSAT_8X137440
Uncharacterized protein.
    
 0.550
LSAT_4X138820
WD_REPEATS_REGION domain-containing protein.
    
 0.524
LSAT_1X77340
B30.2/SPRY domain-containing protein.
    
 0.523
LSAT_6X26280
Uncharacterized protein.
  
 
  0.444
LSAT_7X42660
RRM domain-containing protein.
  
 
  0.439
LSAT_8X77121
Uncharacterized protein.
   
 0.438
LSAT_4X176280
Uncharacterized protein.
   
 0.438
LSAT_5X119120
RRM domain-containing protein.
  
 
  0.428
LSAT_7X91261
RRM domain-containing protein.
  
 
  0.427
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.