STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_2X24101Peptidylprolyl isomerase. (246 aa)    
Predicted Functional Partners:
LSAT_4X35140
Brix domain-containing protein.
   
 
 0.782
LSAT_1X62020
Nop domain-containing protein.
   
 
 0.606
LSAT_2X95881
Nop domain-containing protein.
   
 
 0.606
LSAT_3X131281
Peptidylprolyl isomerase.
  
 
 0.594
LSAT_2X109841
Uncharacterized protein.
   
   0.588
LSAT_7X76380
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
   0.588
LSAT_5X138060
Uncharacterized protein.
   
   0.588
LSAT_9X41400
Peptidylprolyl isomerase.
  
 
 0.579
LSAT_9X95880
PPIase cyclophilin-type domain-containing protein.
  
 0.558
LSAT_7X76501
Brix domain-containing protein.
   
   0.551
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.