STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_7X31081Uncharacterized protein. (1067 aa)    
Predicted Functional Partners:
LSAT_7X110720
MIF4G domain-containing protein.
    
 0.554
LSAT_3X42421
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
  
  
 0.518
LSAT_8X66001
Uncharacterized protein.
  
     0.493
LSAT_2X102140
Uncharacterized protein.
  
     0.481
LSAT_7X80801
Uncharacterized protein.
  
     0.479
LSAT_7X29400
Uncharacterized protein.
  
 
   0.477
LSAT_5X188760
zf-U1 domain-containing protein.
    
 0.470
LSAT_7X52500
Uncharacterized protein.
  
  
 0.466
LSAT_6X69301
PCI domain-containing protein.
  
   
 0.462
LSAT_2X16580
SAP domain-containing protein.
  
 
   0.460
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.