STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_8X133041N-acetyltransferase domain-containing protein. (158 aa)    
Predicted Functional Partners:
LSAT_8X61061
Uncharacterized protein.
   
 0.957
LSAT_5X131321
Uncharacterized protein.
   
 0.957
LSAT_1X39580
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.845
LSAT_5X137520
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.845
LSAT_2X112821
Small nuclear ribonucleoprotein-associated protein.
    
 0.707
LSAT_8X20501
Small nuclear ribonucleoprotein-associated protein.
    
 0.707
LSAT_8X16800
Sm domain-containing protein.
    
 0.707
LSAT_2X11841
N-acetyltransferase domain-containing protein.
   
  
 0.504
LSAT_9X14720
TPR_REGION domain-containing protein.
      
 0.487
LSAT_6X21660
N-acetyltransferase domain-containing protein.
   
  
 0.456
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.