STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_6X40941Uncharacterized protein. (496 aa)    
Predicted Functional Partners:
LSAT_7X110680
Sulfurtransferase.
      
 0.586
LSAT_2X30681
Uncharacterized protein.
      
 0.586
LSAT_4X93521
Uncharacterized protein.
      
 0.586
LSAT_6X97140
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.519
LSAT_4X151120
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.519
LSAT_5X67800
3-ketoacyl-CoA synthase.
    
 
 0.494
LSAT_9X60720
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.482
LSAT_8X144061
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.482
LSAT_1X84561
Carrier domain-containing protein.
  
 0.469
LSAT_2X97681
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.455
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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