STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_3X26821Uncharacterized protein. (314 aa)    
Predicted Functional Partners:
LSAT_9X47141
ERCC4 domain-containing protein.
    
 0.615
LSAT_5X68921
DNA polymerase.
   
 0.595
LSAT_4X184221
Small nuclear ribonucleoprotein Sm D2.
    
 0.544
LSAT_1X125120
Uncharacterized protein.
  
 
  0.530
LSAT_7X18160
Uncharacterized protein.
  
 
  0.530
LSAT_5X163500
DNA_pol_E_B domain-containing protein.
    
 0.526
LSAT_5X163440
Uncharacterized protein.
    
 0.526
LSAT_4X30361
Uncharacterized protein.
  
  0.523
LSAT_8X21821
Uncharacterized protein.
  
 
 0.522
LSAT_4X82360
DUF4408 domain-containing protein.
  
  0.520
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.