STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_1X48021Uncharacterized protein. (93 aa)    
Predicted Functional Partners:
LSAT_2X92181
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
    
 0.848
LSAT_6X55280
Uncharacterized protein.
     
 0.791
LSAT_9X14160
Uncharacterized protein.
     
 0.791
LSAT_9X59821
Peptidase_M48 domain-containing protein.
    
 
 0.719
LSAT_4X34641
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
    
 
 0.719
LSAT_8X14540
Peptidase_M48_N domain-containing protein.
    
 
 0.719
LSAT_6X24461
Rhodanese domain-containing protein.
     
 0.699
LSAT_9X124460
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
   0.664
LSAT_0X46360
Uncharacterized protein.
    
 
 0.548
LSAT_8X157341
Peptidase_M48 domain-containing protein.
    
 
 0.548
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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