STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_8X47881Methyltransferase. (506 aa)    
Predicted Functional Partners:
LSAT_1X49060
Uncharacterized protein.
  
  
 0.648
LSAT_2X39681
Uncharacterized protein.
  
  
 0.648
LSAT_9X15021
Uncharacterized protein.
  
  
 0.593
LSAT_4X92841
Uncharacterized protein.
  
 
 0.593
LSAT_9X112421
Uncharacterized protein.
  
 
 0.593
LSAT_7X85621
Uncharacterized protein.
  
 
 0.593
LSAT_1X37961
Uncharacterized protein.
  
 
 0.593
LSAT_4X117720
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
  
 0.586
LSAT_4X19920
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
 
 0.509
LSAT_3X91220
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
 
 0.509
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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