STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_9X55081WD_REPEATS_REGION domain-containing protein. (372 aa)    
Predicted Functional Partners:
LSAT_6X22420
Transcription factor HY5-like protein.
   
 0.943
LSAT_5X30441
BZIP domain-containing protein.
   
 0.943
LSAT_5X146840
Uncharacterized protein.
    
 
 0.939
LSAT_4X131640
WD_REPEATS_REGION domain-containing protein.
     
 0.927
LSAT_7X14480
Uncharacterized protein.
  
 
0.911
LSAT_5X171361
WD_REPEATS_REGION domain-containing protein.
    
 0.911
LSAT_5X123420
Uncharacterized protein.
  
 
0.910
LSAT_4X62980
Uncharacterized protein.
  
 
0.910
LSAT_5X55560
Uncharacterized protein.
  
 
0.909
LSAT_5X82200
Uncharacterized protein.
    
  0.904
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.