STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_8X117941Uncharacterized protein. (1012 aa)    
Predicted Functional Partners:
LSAT_6X10640
HMA domain-containing protein.
  
 0.904
LSAT_5X100040
HMA domain-containing protein.
    
 0.554
LSAT_8X24561
HMA domain-containing protein.
    
 0.511
LSAT_5X41621
HMA domain-containing protein.
    
 0.488
LSAT_2X99221
Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
      
 0.471
LSAT_8X13301
HMA domain-containing protein.
    
 0.467
LSAT_9X55940
Uncharacterized protein.
    
 0.429
LSAT_9X103440
FMN hydroxy acid dehydrogenase domain-containing protein.
      
 0.418
LSAT_5X120941
FMN hydroxy acid dehydrogenase domain-containing protein.
      
 0.418
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.