STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_1X37081Uncharacterized protein. (836 aa)    
Predicted Functional Partners:
LSAT_9X69180
Nudix hydrolase domain-containing protein.
     
 0.590
LSAT_8X57241
Hexosyltransferase; Belongs to the glycosyltransferase 8 family.
  
     0.497
LSAT_0X1060
Uncharacterized protein.
  
     0.488
LSAT_8X67421
Uncharacterized protein.
  
     0.486
LSAT_3X132580
Hexosyltransferase; Belongs to the glycosyltransferase 8 family.
  
     0.484
LSAT_6X79560
Uncharacterized protein.
  
     0.479
LSAT_3X135500
Uncharacterized protein.
  
     0.475
LSAT_5X182380
Uncharacterized protein.
  
     0.473
LSAT_9X33780
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
  
     0.472
LSAT_4X164340
Pkinase_Tyr domain-containing protein.
  
     0.467
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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