LSAT_4X136961 protein (Lactuca sativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LSAT_4X136961

Amino_oxidase domain-containing protein. (488 aa)

Predicted Functional Partners:

LSAT_1X59241

0.946

LSAT_6X97140

0.941

LSAT_4X151120

0.941

LSAT_6X47461

0.940

LSAT_6X47421

0.940

LSAT_2X97681

0.940

LSAT_5X136600

0.936

LSAT_4X74900

0.934

LSAT_2X92421

0.934

LSAT_8X158360

0.934

Your Current Organism:

Lactuca sativa

NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSAT_1X59241	LSAT_4X136961	A0A2J6L0F7	A0A2J6M7E3	CN hydrolase domain-containing protein.	Amino_oxidase domain-containing protein.	0.946
LSAT_1X59241	LSAT_8X158360	A0A2J6L0F7	A0A2J6LAS0	CN hydrolase domain-containing protein.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.962
LSAT_2X92421	LSAT_4X136961	A0A2J6KRQ6	A0A2J6M7E3	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Amino_oxidase domain-containing protein.	0.934
LSAT_2X97681	LSAT_4X136961	A0A2J6M587	A0A2J6M7E3	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Amino_oxidase domain-containing protein.	0.940
LSAT_4X136961	LSAT_1X59241	A0A2J6M7E3	A0A2J6L0F7	Amino_oxidase domain-containing protein.	CN hydrolase domain-containing protein.	0.946
LSAT_4X136961	LSAT_2X92421	A0A2J6M7E3	A0A2J6KRQ6	Amino_oxidase domain-containing protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.934
LSAT_4X136961	LSAT_2X97681	A0A2J6M7E3	A0A2J6M587	Amino_oxidase domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.940
LSAT_4X136961	LSAT_4X151120	A0A2J6M7E3	A0A2J6M6S0	Amino_oxidase domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.941
LSAT_4X136961	LSAT_4X74900	A0A2J6M7E3	A0A2J6JUA7	Amino_oxidase domain-containing protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.934
LSAT_4X136961	LSAT_5X136600	A0A2J6M7E3	A0A2J6LI66	Amino_oxidase domain-containing protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.936
LSAT_4X136961	LSAT_6X47421	A0A2J6M7E3	A0A2J6KPK0	Amino_oxidase domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.940
LSAT_4X136961	LSAT_6X47461	A0A2J6M7E3	A0A2J6KPG5	Amino_oxidase domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.940
LSAT_4X136961	LSAT_6X97140	A0A2J6M7E3	A0A2J6M125	Amino_oxidase domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.941
LSAT_4X136961	LSAT_8X158360	A0A2J6M7E3	A0A2J6LAS0	Amino_oxidase domain-containing protein.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.934
LSAT_4X151120	LSAT_4X136961	A0A2J6M6S0	A0A2J6M7E3	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Amino_oxidase domain-containing protein.	0.941
LSAT_4X74900	LSAT_4X136961	A0A2J6JUA7	A0A2J6M7E3	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Amino_oxidase domain-containing protein.	0.934
LSAT_5X136600	LSAT_4X136961	A0A2J6LI66	A0A2J6M7E3	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Amino_oxidase domain-containing protein.	0.936
LSAT_6X47421	LSAT_4X136961	A0A2J6KPK0	A0A2J6M7E3	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Amino_oxidase domain-containing protein.	0.940
LSAT_6X47461	LSAT_4X136961	A0A2J6KPG5	A0A2J6M7E3	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Amino_oxidase domain-containing protein.	0.940
LSAT_6X97140	LSAT_4X136961	A0A2J6M125	A0A2J6M7E3	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Amino_oxidase domain-containing protein.	0.941