STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_5X190040Uncharacterized protein. (416 aa)    
Predicted Functional Partners:
LSAT_5X173181
SAGA-associated factor 11.
    
 
 0.647
LSAT_4X74980
Uncharacterized protein.
   
 
 0.634
LSAT_6X32161
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 
 0.623
LSAT_4X55920
PAP_fibrillin domain-containing protein.
   
 
 0.588
LSAT_2X75940
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.588
LSAT_6X103061
Splicing factor subunit; Belongs to the SF3B5 family.
    
   0.539
LSAT_6X24321
TFIID_20kDa domain-containing protein.
    
 
 0.490
LSAT_2X105561
TFIID_20kDa domain-containing protein.
    
 
 0.490
LSAT_1X38060
TFIID_20kDa domain-containing protein.
    
 
 0.490
LSAT_9X8160
Uncharacterized protein.
    
 
 0.486
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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