STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_2X93741Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
LSAT_9X3120
SnAC domain-containing protein.
    
 
 0.563
LSAT_8X137440
Uncharacterized protein.
    
 
 0.563
LSAT_1X67700
TAFII55_N domain-containing protein.
    
 
 0.560
LSAT_6X54260
TAFII55_N domain-containing protein.
    
 
 0.560
LSAT_2X63440
Histone domain-containing protein.
  
 
 
 0.499
LSAT_5X36501
Histone domain-containing protein.
  
 
 
 0.499
LSAT_1X6521
Histone domain-containing protein.
  
 
 
 0.451
LSAT_1X55460
Uncharacterized protein.
   
 
 0.430
LSAT_1X42160
Uncharacterized protein.
    
 
 0.411
LSAT_2X98340
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.409
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.