STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_1X39200Remorin_C domain-containing protein. (441 aa)    
Predicted Functional Partners:
LSAT_4X91240
Uncharacterized protein.
  
     0.492
LSAT_9X54560
Uncharacterized protein.
  
     0.474
LSAT_6X80801
Uncharacterized protein.
  
     0.465
LSAT_1X24841
Uncharacterized protein.
  
     0.458
LSAT_3X140300
Uncharacterized protein.
  
     0.449
LSAT_1X9521
PORR domain-containing protein.
  
     0.449
LSAT_8X55920
PORR domain-containing protein.
  
     0.447
LSAT_1X39361
Uncharacterized protein.
  
     0.444
LSAT_6X104300
Uncharacterized protein.
  
     0.441
LSAT_7X80300
Uncharacterized protein.
  
     0.438
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.