STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_4X9780SWIM-type domain-containing protein. (810 aa)    
Predicted Functional Partners:
LSAT_3X120420
Uncharacterized protein.
    
 0.901
LSAT_1X12240
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.897
LSAT_8X92980
Uncharacterized protein.
    
 0.833
LSAT_4X55920
PAP_fibrillin domain-containing protein.
   
 0.735
LSAT_2X75940
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.735
LSAT_3X61420
Uncharacterized protein; Belongs to the cytochrome P450 family.
      
 0.722
LSAT_8X109740
Uncharacterized protein; Belongs to the actin family.
    
 0.704
LSAT_5X15800
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.681
LSAT_1X62081
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.681
LSAT_9X48061
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.681
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.