STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_4X72880Uncharacterized protein. (142 aa)    
Predicted Functional Partners:
LSAT_5X15901
Uncharacterized protein.
   
 0.994
LSAT_8X80961
Uncharacterized protein.
   
 0.990
LSAT_5X105520
Uncharacterized protein.
   
 0.990
LSAT_1X8300
Protein kinase domain-containing protein.
   
 
 0.934
LSAT_6X112781
Protein kinase domain-containing protein.
   
 
 0.934
LSAT_2X3201
BUB1 N-terminal domain-containing protein.
   
 0.926
LSAT_2X124280
BUB1 N-terminal domain-containing protein.
   
 0.926
LSAT_4X66841
Uncharacterized protein.
   
 0.926
LSAT_8X8781
Structural maintenance of chromosomes protein.
   
 
 0.898
LSAT_3X29441
HORMA domain-containing protein.
   
 0.871
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.