STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001463905_00366Unannotated protein. (395 aa)    
Predicted Functional Partners:
GCA_001463905_01727
Unannotated protein.
 
 
 0.980
GCA_001463905_02254
Unannotated protein.
 
  
 0.974
GCA_001463905_01775
Unannotated protein.
 
   
 0.879
GCA_001463905_01756
Unannotated protein.
 
  
 0.877
GCA_001463905_00367
Unannotated protein.
 
     0.852
GCA_001463905_03522
Unannotated protein.
  
 
 0.843
GCA_001463905_01174
Unannotated protein.
  
   0.806
GCA_001463905_03588
Unannotated protein.
  
   0.741
GCA_001463905_01498
Unannotated protein.
  
 
  0.707
GCA_001463905_01507
Unannotated protein.
    
  0.679
Your Current Organism:
Aureimonas frigidaquae
NCBI taxonomy Id: 424757
Other names: A. frigidaquae, Aurantimonas frigidaquae, Aurantimonas frigidaquae Kim et al. 2008, Aureimonas frigidaquae (Kim et al. 2008) Rathsack et al. 2011, DSM 21987, JCM 14755, KCTC 12893, strain CW5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.