STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0010LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (248 aa)    
Predicted Functional Partners:
Ssed_0012
KEGG: bte:BTH_I0230 conserved hypothetical protein TIGR00370, putative.
 
 0.999
Ssed_0011
KEGG: slo:Shew_0007 UreA amidolyase related protein.
 
 
 0.998
Ssed_3846
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.921
Ssed_0948
KEGG: shw:Sputw3181_0717 gamma-glutamyltransferase.
     
  0.900
gshA
KEGG: slo:Shew_1227 glutamate--cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
  0.900
Ssed_2689
KEGG: she:Shewmr4_2297 gamma-glutamyltransferase.
     
  0.900
Ssed_2476
KEGG: slo:Shew_1809 NAD-glutamate dehydrogenase.
    
  0.803
Ssed_0292
KEGG: slo:Shew_3554 glutamine synthetase, type I.
   
 
  0.802
Ssed_1060
KEGG: slo:Shew_0972 glutamate--ammonia ligase; Belongs to the glutamine synthetase family.
   
 
  0.802
Ssed_2532
KEGG: ppr:PBPRB0862 hypothetical protein; Belongs to the glutamine synthetase family.
   
 
  0.802
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.