Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ssed_0331KEGG: slo:Shew_3502 AMP-dependent synthetase and ligase. (555 aa)    
Predicted Functional Partners:
Ssed_0705
KEGG: slo:Shew_3323 lipase-like.
   
 
 0.809
Ssed_4459
KEGG: slo:Shew_3776 AMP-dependent synthetase and ligase.
  
  
 
0.707
Ssed_3136
KEGG: slo:Shew_2610 AMP-dependent synthetase and ligase.
  
  
 
0.685
Ssed_3695
KEGG: shm:Shewmr7_3139 AMP-dependent synthetase and ligase.
 
 
0.684
Ssed_1667
KEGG: pau:PA14_21340 long-chain-fatty-acid--CoA ligase.
 
 
0.671
Ssed_2263
KEGG: sfr:Sfri_1606 AMP-dependent synthetase and ligase.
 
 
0.668
Ssed_2523
KEGG: slo:Shew_2188 AMP-dependent synthetase and ligase.
 
 
0.664
Ssed_0330
KEGG: sbl:Sbal_0350 Na+/Ca+ antiporter, CaCA family.
  
    0.468
Ssed_3137
KEGG: slo:Shew_2611 ABC transporter-related protein.
  
  
 0.432
trmH
tRNA guanosine-2'-O-methyltransferase; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.424
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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