STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0342KEGG: slo:Shew_2279 tetraheme cytochrome c. (126 aa)    
Predicted Functional Partners:
Ssed_2273
KEGG: ppr:PBPRA1988 putative pyruvate oxidoreductase.
  
  
 0.908
Ssed_2358
Hydrolyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.893
Ssed_4116
KEGG: slo:Shew_0332 fumarate reductase respiratory complex, transmembrane subunit.
 
 0.887
Ssed_4424
KEGG: slo:Shew_0056 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
 0.870
Ssed_4115
KEGG: slo:Shew_0333 fumarate reductase respiratory complex, transmembrane subunit.
 
 0.868
Ssed_4113
KEGG: slo:Shew_0335 succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 0.863
Ssed_0344
KEGG: son:SO3058 flavocytochrome c flavin subunit, putative; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
 
     0.861
Ssed_2815
KEGG: slo:Shew_1654 succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 0.819
Ssed_2818
KEGG: slo:Shew_1651 succinate dehydrogenase, cytochrome b subunit.
  
 0.773
Ssed_2817
Conserved hypothetical succinate dehydrogenase, hydrophobic subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
 
 0.765
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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