STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0366KEGG: ppr:PBPRA2016 hypothetical protein. (441 aa)    
Predicted Functional Partners:
Ssed_0364
KEGG: sfr:Sfri_3880 hypothetical protein.
 
     0.870
Ssed_0365
KEGG: sfr:Sfri_3881 adenylate cyclase.
 
     0.789
Ssed_0363
KEGG: sfr:Sfri_3879 sodium/sulphate symporter.
 
     0.515
Ssed_3854
KEGG: slo:Shew_0597 major facilitator superfamily MFS_1.
  
     0.425
Ssed_0367
KEGG: sfr:Sfri_3882 phosphate-selective porin O and P.
       0.413
Ssed_0369
KEGG: sfr:Sfri_3884 protein of unknown function DUF47.
 
     0.412
Ssed_0368
KEGG: sfr:Sfri_3883 hypothetical protein.
       0.408
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.