STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0416KEGG: slo:Shew_3447 hypothetical protein. (150 aa)    
Predicted Functional Partners:
priB
Single-strand binding protein/primosomal replication protein N; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.728
Ssed_0417
Peptidase M23B; KEGG: slo:Shew_3446 peptidase M23B.
       0.616
Ssed_2753
KEGG: sbl:Sbal_1801 protein of unknown function DUF1425.
  
     0.526
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
       0.509
Ssed_3864
KEGG: slo:Shew_0590 hypothetical protein.
  
     0.507
Ssed_3177
KEGG: slo:Shew_2652 hypothetical protein.
  
     0.483
Ssed_1527
KEGG: slo:Shew_2522 decaheme cytochrome c.
  
     0.443
Ssed_3439
KEGG: slo:Shew_2889 uncharacterized lipoprotein.
  
     0.442
Ssed_1528
KEGG: slo:Shew_2521 decaheme cytochrome c MtrF.
  
     0.440
Ssed_2336
KEGG: slo:Shew_1918 CopG domain protein DNA-binding domain protein.
  
     0.435
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.