STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0430KEGG: shn:Shewana3_0425 regulatory protein GntR, HTH. (250 aa)    
Predicted Functional Partners:
Ssed_4175
KEGG: shm:Shewmr7_0316 transcriptional regulator, GntR family.
 
  
 0.734
Ssed_3967
KEGG: slo:Shew_3218 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.706
Ssed_0907
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.696
Ssed_0431
Pyruvate dehydrogenase (acetyl-transferring); Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
  
 0.661
Ssed_0432
Dihydrolipoyllysine-residue succinyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
  
 0.656
Ssed_1759
KEGG: slo:Shew_2365 transcriptional regulator, GntR family.
 
  
 0.653
fadR
Fatty acid responsive transcription factor FadR domain protein; Multifunctional regulator of fatty acid metabolism.
  
   
 0.637
Ssed_4448
KEGG: slo:Shew_3758 transcriptional regulator, histidine utilization repressor, GntR family.
  
  
 0.584
Ssed_1284
KEGG: slo:Shew_1199 protein of unknown function DUF416.
  
     0.554
Ssed_0429
KEGG: slo:Shew_3433 signaling modulator of AmpD, AmpE.
 
     0.540
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.