Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ssed_0484KEGG: slo:Shew_0350 peptidylprolyl isomerase, FKBP-type. (262 aa)    
Predicted Functional Partners:
Ssed_0485
Cytochrome c biogenesis factor-like protein; KEGG: shn:Shewana3_0492 formate-dependent nitrite reductase, NrfG protein.
  
    0.666
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.663
Ssed_0483
KEGG: shw:Sputw3181_0578 rhodanese domain protein.
  
    0.652
apaH
Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
 0.634
Ssed_0482
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
 
    0.624
Ssed_1175
Aspartate kinase., Homoserine dehydrogenase; KEGG: slo:Shew_1079 aspartate kinase; In the C-terminal section; belongs to the homoserine dehydrogenase family.
   
   0.593
Ssed_4040
Aspartate kinase., Homoserine dehydrogenase; KEGG: slo:Shew_0521 aspartate kinase; In the C-terminal section; belongs to the homoserine dehydrogenase family.
   
   0.593
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.588
htpG
Heat shock protein HSP90; Molecular chaperone. Has ATPase activity.
   
 0.573
Ssed_0487
KEGG: slo:Shew_0353 polysulphide reductase, NrfD.
       0.535
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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