STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0486KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (234 aa)    
Predicted Functional Partners:
Ssed_0487
KEGG: slo:Shew_0353 polysulphide reductase, NrfD.
 
    0.866
Ssed_4208
KEGG: slo:Shew_0245 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.781
Ssed_3982
KEGG: slo:Shew_3243 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.746
Ssed_4047
KEGG: slo:Shew_0608 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   0.674
Ssed_0485
Cytochrome c biogenesis factor-like protein; KEGG: shn:Shewana3_0492 formate-dependent nitrite reductase, NrfG protein.
       0.613
Ssed_4415
KEGG: son:SO4515 formate dehydrogenase, C subunit, putative.
  
 
 0.611
Ssed_4419
KEGG: slo:Shew_0061 formate dehydrogenase, gamma subunit.
  
 
 0.611
Ssed_4214
KEGG: slo:Shew_0239 formate dehydrogenase, gamma subunit.
  
 
 0.588
Ssed_0229
KEGG: spc:Sputcn32_0627 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.579
Ssed_1307
KEGG: sfr:Sfri_3128 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.578
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.