STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0488KEGG: she:Shewmr4_0494 NosL family protein. (166 aa)    
Predicted Functional Partners:
Ssed_0489
KEGG: shw:Sputw3181_0582 periplasmic copper-binding.
 
 
 0.985
Ssed_0491
KEGG: slo:Shew_0357 copper ABC transporter, permease protein.
 
 
 0.983
Ssed_0500
KEGG: shw:Sputw3181_0582 periplasmic copper-binding.
 
 
 0.972
Ssed_0502
KEGG: slo:Shew_0357 copper ABC transporter, permease protein.
 
 
 0.969
Ssed_0490
KEGG: slo:Shew_0356 ABC transporter-related protein.
 
 
 0.939
Ssed_0501
KEGG: slo:Shew_0356 ABC transporter-related protein.
 
 
 0.895
Ssed_3351
Peptidase U32; KEGG: she:Shewmr4_1060 peptidase U32.
 
    0.629
Ssed_4503
KEGG: sbl:Sbal_0362 type III restriction enzyme, res subunit.
   
    0.625
Ssed_2876
KEGG: slo:Shew_2322 NnrS family protein.
 
     0.589
Ssed_3359
KEGG: slo:Shew_2797 trimethylamine-N-oxide reductase C-type cytochrome TorC; Belongs to the TorC/TorY family.
  
     0.513
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.