STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0490KEGG: slo:Shew_0356 ABC transporter-related protein. (302 aa)    
Predicted Functional Partners:
Ssed_0491
KEGG: slo:Shew_0357 copper ABC transporter, permease protein.
 
 
 0.984
Ssed_0489
KEGG: shw:Sputw3181_0582 periplasmic copper-binding.
 
 0.970
Ssed_0488
KEGG: she:Shewmr4_0494 NosL family protein.
 
 
 0.939
Ssed_0585
KEGG: slo:Shew_0425 ABC-2 type transporter.
 
  
 0.937
Ssed_0502
KEGG: slo:Shew_0357 copper ABC transporter, permease protein.
 
 
 0.936
Ssed_0501
KEGG: slo:Shew_0356 ABC transporter-related protein.
  
  
 
0.903
Ssed_0499
KEGG: son:SO0485 NosL protein.
 
 
 0.888
Ssed_0500
KEGG: shw:Sputw3181_0582 periplasmic copper-binding.
 
 0.871
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
    
0.727
Ssed_1678
KEGG: vfi:VF0678 oligopeptide transport ATP-binding protein OppD.
 
     0.696
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.