STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0761KEGG: slo:Shew_3279 hypothetical protein. (740 aa)    
Predicted Functional Partners:
Ssed_2357
KEGG: slo:Shew_1905 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.679
Ssed_3718
KEGG: slo:Shew_0727 integral membrane sensor signal transduction histidine kinase.
  
     0.586
Ssed_2036
KEGG: spc:Sputcn32_1940 TonB-dependent receptor.
  
     0.575
Ssed_0814
KEGG: slo:Shew_0774 peptidase S9B, dipeptidylpeptidase IV domain protein.
  
     0.548
Ssed_0762
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
       0.547
Ssed_3854
KEGG: slo:Shew_0597 major facilitator superfamily MFS_1.
  
     0.540
Ssed_2057
KEGG: slo:Shew_2053 peptidyl-dipeptidase A.
  
     0.492
Ssed_2861
KEGG: sfr:Sfri_2416 TonB-dependent receptor.
  
     0.482
Ssed_1000
KEGG: slo:Shew_0920 major facilitator superfamily MFS_1.
  
     0.475
Ssed_2237
KEGG: sus:Acid_1539 MutT/NUDIX family protein.
  
     0.466
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.