STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0807KEGG: slo:Shew_0576 peptidase S9, prolyl oligopeptidase active site domain protein. (827 aa)    
Predicted Functional Partners:
Ssed_0178
KEGG: slo:Shew_0105 peptidase M14, carboxypeptidase A.
  
     0.724
Ssed_3317
KEGG: slo:Shew_2759 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.693
Ssed_0607
KEGG: sbl:Sbal_0513 hypothetical protein.
  
     0.680
Ssed_1443
Amidohydrolase; KEGG: slo:Shew_2586 amidohydrolase.
 
     0.650
Ssed_3506
KEGG: slo:Shew_2958 hypothetical protein.
  
     0.645
Ssed_1442
KEGG: slo:Shew_2587 hypothetical protein.
 
     0.639
Ssed_3312
KEGG: slo:Shew_2757 hypothetical protein.
  
     0.626
Ssed_3175
KEGG: shw:Sputw3181_2770 hypothetical protein.
  
     0.624
Ssed_1789
KEGG: saz:Sama_1540 conserved hypothetical protein.
  
     0.620
Ssed_0018
Amidohydrolase; KEGG: slo:Shew_0013 amidohydrolase.
 
    0.618
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.