STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0995KEGG: cps:CPS_0091 hypothetical protein. (206 aa)    
Predicted Functional Partners:
fur
KEGG: slo:Shew_1661 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.858
Ssed_0996
KEGG: shw:Sputw3181_3146 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
       0.784
Ssed_0994
KEGG: slo:Shew_0914 NADPH-dependent FMN reductase.
  
  
 0.669
Ssed_0829
Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
    0.661
Ssed_1848
KEGG: slo:Shew_1516 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
    0.661
Ssed_4389
KEGG: slo:Shew_0100 protein of unknown function UPF0057.
   
   0.636
Ssed_4286
KEGG: slo:Shew_0191 cytochrome c, class I.
    
   0.634
Ssed_0997
KEGG: slo:Shew_0917 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.531
Ssed_0993
KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein.
       0.491
Ssed_4424
KEGG: slo:Shew_0056 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
   0.486
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.