STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1017KEGG: slo:Shew_0942 RDD domain containing protein. (174 aa)    
Predicted Functional Partners:
Ssed_0803
Cytochrome c1; KEGG: slo:Shew_0572 cytochrome c1.
  
     0.709
Ssed_4360
KEGG: slo:Shew_3621 RNA-binding S4 domain protein; Belongs to the HSP15 family.
  
    0.626
Ssed_1018
KEGG: pha:PSHAa2433 hypothetical protein.
 
     0.621
Ssed_1228
KEGG: slo:Shew_1133 hypothetical protein.
  
     0.617
Ssed_0801
Ubiquinol--cytochrome-c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
     0.616
Ssed_0094
KEGG: slo:Shew_3716 cytochrome c, class I.
  
     0.613
Ssed_2840
KEGG: son:SO2650 hypothetical protein.
  
   
 0.590
Ssed_0802
Cytochrome b/b6, N-terminal domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
     0.525
Ssed_0192
KEGG: slo:Shew_0119 hypothetical protein.
  
     0.514
Ssed_1651
KEGG: slo:Shew_2307 hypothetical protein.
  
     0.499
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.