Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ssed_1024Peptidase M24; KEGG: sbl:Sbal_3085 peptidase M24. (595 aa)    
Predicted Functional Partners:
guaB
Malate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.675
Ssed_3421
Xaa-His dipeptidase; KEGG: slo:Shew_2852 aminoacyl-histidine dipeptidase.
 
 
 0.548
Ssed_2273
KEGG: ppr:PBPRA1988 putative pyruvate oxidoreductase.
     
 0.534
Ssed_2256
Negative regulator of beta-lactamase expression-like protein; KEGG: sfv:SFV_0855 putative regulator.
  
    0.494
Ssed_3657
KEGG: slo:Shew_3055 CMP/dCMP deaminase, zinc-binding.
 
  
 0.490
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
 
   
 0.461
trpC
KEGG: slo:Shew_2254 indole-3-glycerol-phosphate synthase., phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
  
  
 0.444
Ssed_1026
KEGG: sbl:Sbal_3084 ROK family protein.
 
     0.416
Ssed_1025
KEGG: slo:Shew_0953 major facilitator superfamily MFS_1.
       0.409
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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