STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1403KEGG: sfr:Sfri_3685 outer membrane protein. (668 aa)    
Predicted Functional Partners:
Ssed_1402
KEGG: sfr:Sfri_3686 cytochrome c family protein.
 
 
 0.950
Ssed_1530
KEGG: she:Shewmr4_2506 cytochrome c family protein.
 
 
 0.841
Ssed_1524
KEGG: slo:Shew_2526 cytochrome c family protein.
 
 
 0.827
Ssed_0227
KEGG: sfr:Sfri_3686 cytochrome c family protein.
 
 
 0.820
Ssed_0352
KEGG: sfr:Sfri_3130 cytochrome c family protein.
 
 
 0.819
Ssed_2925
KEGG: sfr:Sfri_3130 cytochrome c family protein.
 
 
 0.817
Ssed_0361
KEGG: son:SO1777 decaheme cytochrome c MtrA.
 
   0.806
Ssed_1305
KEGG: shm:Shewmr7_2579 cytochrome c family protein.
 
   0.806
Ssed_2149
KEGG: sbl:Sbal_1588 cytochrome c family protein.
 
   0.805
Ssed_1528
KEGG: slo:Shew_2521 decaheme cytochrome c MtrF.
  
   
 0.786
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.